Nutrigenomics

RNA-mediated cell types and precision medicine

Health: Make precision medicine work for cancer care Excerpt: After years of failure with the usual arsenal of surgery, chemotherapy and radiation, the physicians included the drug Herceptin (trastuzumab) in the woman’s treatment. Herceptin is more commonly used for breast cancer, but it targets the HER2 mutation. Since taking the drug, she has been free of disease. Reported on April 20, 2015 in MLO – Medical Laboratory Observer as: Big data key to precision medicine’s success “Technological advances are enabling scientists…

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Amino acid-dependent cell type differentiation

mTORC1 is a protein complex that functions as a nutrient/energy/redox sensor and controls protein synthesis. “MCRS1 Binds and Couples Rheb to Amino Acid-Dependent mTORC1 Activation” reported as: Oncogene regulated by nutrients identified A protein that is a molecular link connects Rheb-GTP to mTORC1 activation, lysosomes, and amino acid responses. Depletion of the protein links a chain of interactions to mTORC1 inactivation. The authors address the complexity of the biophysically constrained chemistry of RNA-directed DNA methylation and RNA-mediated protein folding, which…

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A genetic variant refutes neo-Darwinism

Summary: They link a single nucleotide polymorphism (SNP) to a genetic variant that decreases viability of an embryo, without linking a nutrient-dependent RNA-mediated amino acid substitution to pheromone-controlled cell type differentiation that begins in the embryo and continues throughout the life history transitions of invertebrates and vertebrates. A Benefit of Failed Pregnancy? This genome-wide association study revealed “…a striking link between mitotic aneuploidy and a single nucleotide variant (SNP rs2305957) on chromosome 4 of maternal genomes.” Excerpt: “There’s this genetic…

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Methylation maintains cell type differences (2)

Follow up to:  Methylation maintains cell type differences Brain’s ‘gender’ may be quite flexible: Mechanism that plays key role in sexual differentiation of brain described Excerpt: “Prof. McCarthy is now doing additional research on the links between the immune system and brain sex differences.” See also: An immune hypothesis of sexual orientation Excerpt: “…this ICS-hypothesis is consistent with the fact that many mfTSs can have children and does not preclude effects of odors and pheromones, but elucidates why those substances…

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Quantum correlations/pseudoscience

A quantum advantage for inferring causal structure Preprint excerpt: “The causal inference schemes described here promise extensive applications in experiments exhibiting quantum eff ects. For instance, they can provide a test of whether the dynamics of a given open quantum system is Markovian or not [17{24]. This is because in a non-Markovian evolution, the environment acts as a common cause between the dynamical system at one time and the same system at a later time. Our inference schemes may also help…

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Anti-entropic solar energy

“We have a group trying to model the mitochondrion” — Ulla Mattfolk Trash pickup problem Excerpt: “The PGAM5 protein would be regulated by an allosteric mechanism, in which its biological function would switch from activation of the PINK1/PARKIN pathway for removal of damaged mitochondria to the FUNDC1 pathway for removal of damaged mitochondria,” according to Hannink. “Peptides behave like drug molecules; any time you can identify a biological process that is regulated by a peptide, that peptide becomes a leading…

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Two types of microRNA are not double agents

Study details microRNA’s role as a double agent during Hep C infection By coopting miRNA-122, the virus appears to alter gene expression in the liver Excerpt: “What if chronic low levels of miRNA-122 prompt changes that, over years, contribute to liver damage and cancer? This could be a molecular link between the viral infection and the pathologies associated with hepatitis C,” Luna says. “More work on miRNA-122 targets in hepatitis C-infected patients may clarify why some go on to develop…

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RNA directed DNA methylation and cell types

Cell type differentiation is included in all topics in biology, which is why it is important to understand what is currently known about top-down causation in the context of physics and chemistry. Taken together, physics, chemistry, and the conserved molecular mechanisms of biology link Drosophila to Octopuses and all other species on this planet via RNA-directed DNA methylation and RNA-mediated amino acid substitutions that differentiate cell types. See for examples: Let there be anti-entropic light (1) An antagonist led me…

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Let there be anti-entropic light (1)

Summary: Light-induced amino acid substitutions link cell type differentiation in plants to nutrient-dependent pheromone-controlled reproduction in animals via the biophysically constrained chemistry of protein folding. Protein folding is perturbed by mutations that limit the ability of organisms to adapt to ecological variation. Viruses contribute to mutations. The sun’s biological energy appears to supply the anti-entropic force that links entropic elasticity to the development of successful morphological and behavioral phenotypes that are exemplified in extant versus extinct biodiversity. The importance of…

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Are mutations beneficial?

Researchers develop non-invasive method to detect tumor-causing mutations in saliva Excerpt: “…a multiplexible electrochemical sensor uses electrode chips to enable vesicular entities in saliva called exosomes to rapidly release molecular constituents (DNA, RNA and proteins) while simultaneously detecting any mutations in tumor-causing DNA sequences. The total detection time is less than 10 minutes and required a small saliva sample.” My comment: This news about multiplexing attests to the complexity of systems biology, which links amino acid substitutions to mutated DNA…

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  • What Darwin proved: there’s no such thing as a species
    GENETICS As Animals Mingle, a Baffling Genetic Barrier A short stretch of DNA is challenging what it means to be a species. By: Emily Singer August 5, 2014 Excerpt: “Scientists have dubbed such regions of the genome “islands of speciation.” The persistence of such islands is a phenomenon that has been observed in a variety of […]
  • Randomness and Divine Providence
    A Q&A on randomness and God’s providence …the main goal is to really put together a collection of scholarly studies of these issues: physicists, biologists, mathematicians, statisticians, philosophers and theologians. replaced: Randomness and Divine Providence Supported by the John Templeton...Read more