Pharmacogenomics

Metabolic competition and cancer

Metabolic Competition in the Tumor Microenvironment Is a Driver of Cancer Progression Excerpt: “…glucose consumption by tumors metabolically restricts T cells, leading to their dampened mTOR activity, glycolytic capacity, and IFN-γ production, thereby allowing tumor progression.” My comment: Does anyone know the difference between 1) a tumor that eats glucose and 2) viruses that steal Metabolic competition and cancer

Creating genes and species

The Octopus Genome: Not “Alien” but Still a Big Problem for Darwinism by Casey Luskin, August 24, 2015 Excerpt: Whenever you see “de novo” origin of a gene invoked, you know that evolutionary biologists lack any explanation for how that gene arose. My comment: I tend to use the experience-dependent “de novo” creation of olfactory Creating genes and species

Cell types, SNVs, CNVs, and chromosomes

See also: A “new” code enables ecological adaptation For comparison, see: Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell Excerpt: Single-molecule and single-cell studies reveal behaviors that are hidden in bulk measurements (1, 2). In a human cell, the genetic information is encoded in 46 chromosomes. The variations occurring in these Cell types, SNVs, CNVs, and chromosomes

Thermotolerance and Longevity

Heterotypic Signals from Neural HSF-1 Separate Thermotolerance from Longevity Excerpt: …it was hypothesized that hsf-1 regulates the aging process by modulating chaperone network components to directly influence the folding state of the proteome ( Morimoto, 2008). Our data suggest an alternate method by which hsf-1 can regulate the aging process. In this model, hsf-1 activates Thermotolerance and Longevity

Anti-entropic containment of energy: symbiosis 1.0

Scientists explore the origins of energy in chemical reactions using experimental quantum chemistry Excerpt: One thing that all chemical reactions have in common—whether they are the reactions that take place inside a battery, the metabolic reactions inside a living organism, or the combustion reactions that cause an explosion—is that they all involve some kind of Anti-entropic containment of energy: symbiosis 1.0

Olfaction & the octopus and human genomes

Secrets of the Deep: Scientists Sequence Genome of Octopus for First Time Excerpt: The genome was arranged differently than in other invertebrates and featured an expansion in a family of genes regulating nerve cell development that previously was thought to be enlarged only in vertebrates. My comment: RNA-mediated gene duplication and RNA-mediated amino acid substitutions Olfaction & the octopus and human genomes

Thermodynamic constraints did not evolve

My model links the biophysically constrained fixation of nutrient-dependent RNA-mediated amino acid substitutions to the stability of organized genomes. Nutrient-dependent/pheromone-controlled adaptive evolution: a model. Nutrient-dependent pheromone-controlled stability of organized genomes has since been placed into the context of anti-aging medicine, as I did in presentations from 1994 and 1995. See: Repression of the Heat Shock Thermodynamic constraints did not evolve